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Refactor sequence file reading

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Former-commit-id: 3dcb96e68da648d72bb585da047e3496427d7851
This commit is contained in:
Eric Coissac
2024-05-01 00:50:23 +02:00
parent 33d4d63acd
commit 5b98393a68
7 changed files with 491 additions and 555 deletions
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11
pkg/obioptions/options.go
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@ -76,8 +76,11 @@ func GenerateOptionParser(optionset ...func(*getoptions.GetOpt)) ArgumentParser
}
if options.Called("pprof") {
go http.ListenAndServe("localhost:8080", nil)
log.Infoln("Start a pprof server at address http://localhost:8080/debug/pprof")
url := "localhost:6060"
go http.ListenAndServe(url, nil)
log.Infof("Start a pprof server at address %s/debug/pprof", url)
log.Info("Profil can be followed running concurrently the command :")
log.Info(" go tool pprof -http=127.0.0.1:8080 'http://localhost:6060/debug/pprof/profile?seconds=30'")
}
// Handle user errors
@ -104,9 +107,9 @@ func GenerateOptionParser(optionset ...func(*getoptions.GetOpt)) ArgumentParser
log.Printf("Number of workers set %d", CLIParallelWorkers())
if options.Called("workers") {
// if options.Called("workers") {
}
// }
if options.Called("solexa") {
SetInputQualityShift(64)