obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

A first functional version of obiclean

Browse Source
This commit is contained in:
Eric Coissac
2022-08-20 18:01:07 +02:00
parent a07d348aea
commit 5dd835d3e7
16 changed files with 1091 additions and 8 deletions
Download Patch File Download Diff File Expand all files Collapse all files

22
cmd/obitools/obiclean/main.go Normal file
View File

@ -0,0 +1,22 @@
package main
import (
"os"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiclean"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
)
func main() {
optionParser := obioptions.GenerateOptionParser(obiclean.OptionSet)
_, args, _ := optionParser(os.Args)
fs, _ := obiconvert.ReadBioSequencesBatch(args...)
cleaned := obiclean.IOBIClean(fs)
obiconvert.WriteBioSequencesBatch(cleaned, true)
}

1
cmd/test/main.go
View File

@ -12,6 +12,7 @@ import (
func main() {
// Creating a file called cpu.trace.
ftrace, err := os.Create("cpu.trace")
if err != nil {
log.Fatal(err)