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patch a bug related to --count option of obicsv

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Former-commit-id: e19e8cc12a99216d24c5e0c5350c273202d84de4
This commit is contained in:
Eric Coissac
2023-11-22 14:51:56 +01:00
parent 2e0c1bd801
commit 6141d404cd
1 changed files with 15 additions and 0 deletions
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15
pkg/obitools/obicsv/options.go
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@ -77,9 +77,24 @@ func CLIPrintSequence() bool {
} }
func CLIPrintCount() bool { func CLIPrintCount() bool {
if i := obiutils.LookFor(_keepOnly, "count"); i >= 0 {
_keepOnly = obiutils.RemoveIndex(_keepOnly, i)
_outputCount = true
}
return _outputCount return _outputCount
} }
func CLIPrintTaxon() bool { func CLIPrintTaxon() bool {
if i := obiutils.LookFor(_keepOnly, "taxid"); i >= 0 {
_keepOnly = obiutils.RemoveIndex(_keepOnly, i)
_outputTaxon = true
}
if i := obiutils.LookFor(_keepOnly, "scientific_name"); i >= 0 {
_keepOnly = obiutils.RemoveIndex(_keepOnly, i)
_outputTaxon = true
}
return _outputTaxon return _outputTaxon
} }
func CLIPrintQuality() bool { func CLIPrintQuality() bool {