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Patch rev complement and first implementation of --auto in obicsv

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Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
This commit is contained in:
Eric Coissac
2023-11-07 09:37:07 +02:00
parent 6a6a6f6f2c
commit 61c30f9b6a
21 changed files with 270 additions and 107 deletions
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11
pkg/obiseq/language.go
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@ -198,6 +198,15 @@ var OBILang = gval.NewLanguage(
composition := (args[0].(*BioSequence)).Composition()
return float64(composition['g']-composition['c']) / float64(composition['g']+composition['c']), nil
}),
gval.Function("gc", func(args ...interface{}) (interface{}, error) {
composition := (args[0].(*BioSequence)).Composition()
return float64(composition['g']+composition['c']) / float64(args[0].(*BioSequence).Len()), nil
}),
gval.Function("composition", func(args ...interface{}) (interface{}, error) {
return (args[0].(*BioSequence)).Composition(), nil
comp := (args[0].(*BioSequence)).Composition()
scomp := make(map[string]float64)
for k, v := range comp {
scomp[string(k)] = float64(v)
}
return scomp, nil
}))