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A go implementation of the fasta reader

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Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
This commit is contained in:
Eric Coissac
2023-09-01 09:30:12 +02:00
parent 3f8c0d6a2f
commit 62b57f4ede
15 changed files with 1403 additions and 77 deletions
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5
pkg/obiformats/ecopcr_read.go
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@ -3,13 +3,14 @@ package obiformats
import (
"encoding/csv"
"fmt"
gzip "github.com/klauspost/pgzip"
"io"
"os"
"path"
"strconv"
"strings"
gzip "github.com/klauspost/pgzip"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
@ -209,7 +210,7 @@ func ReadEcoPCR(reader io.Reader, options ...WithOption) obiiter.IBioSequence {
}()
if opt.pointer.full_file_batch {
newIter = newIter.FullFileIterator()
newIter = newIter.CompleteFileIterator()
}
return newIter