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A go implementation of the fasta reader

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Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
This commit is contained in:
Eric Coissac
2023-09-01 09:30:12 +02:00
parent 3f8c0d6a2f
commit 62b57f4ede
15 changed files with 1403 additions and 77 deletions
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5
pkg/obiformats/options.go
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@ -1,6 +1,7 @@
package obiformats
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
@ -43,8 +44,8 @@ func MakeOptions(setters []WithOption) Options {
with_progress_bar: false,
buffer_size: 2,
quality_shift: 33,
parallel_workers: 4,
batch_size: 5000,
parallel_workers: obioptions.CLIReadParallelWorkers(),
batch_size: obioptions.CLIBatchSize(),
full_file_batch: false,
closefile: false,
appendfile: false,