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Xprize update

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Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
This commit is contained in:
Eric Coissac
2024-07-25 18:09:03 -04:00
parent 4e4fac491f
commit 67665a6b40
18 changed files with 895 additions and 29 deletions
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24
pkg/obitax/sequence_methods.go
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@ -66,3 +66,27 @@ func (taxonomy *Taxonomy) SetPath(sequence *obiseq.BioSequence) string {
return tpath
}
func (taxonomy *Taxonomy) SetScientificName(sequence *obiseq.BioSequence) string {
taxid, err := taxonomy.Taxon(sequence.Taxid())
if err != nil {
log.Fatalf("Taxid %d not defined in the current taxonomy", sequence.Taxid())
}
sequence.SetAttribute("scienctific_name", taxid.ScientificName())
return taxid.ScientificName()
}
func (taxonomy *Taxonomy) SetTaxonomicRank(sequence *obiseq.BioSequence) string {
taxid, err := taxonomy.Taxon(sequence.Taxid())
if err != nil {
log.Fatalf("Taxid %d not defined in the current taxonomy", sequence.Taxid())
}
sequence.SetAttribute("taxonomic_rank", taxid.Rank())
return taxid.Rank()
}