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Xprize update

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Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
This commit is contained in:
Eric Coissac
2024-07-25 18:09:03 -04:00
parent 4e4fac491f
commit 67665a6b40
18 changed files with 895 additions and 29 deletions
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17
pkg/obitax/sequence_predicate.go
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@ -57,6 +57,23 @@ func (taxonomy *Taxonomy) IsSubCladeOf(taxid int) obiseq.SequencePredicate {
return f
}
func (taxonomy *Taxonomy) IsSubCladeOfSlot(key string) obiseq.SequencePredicate {
f := func(sequence *obiseq.BioSequence) bool {
val, ok := sequence.GetStringAttribute(key)
if ok {
parent, err1 := taxonomy.Taxon(val)
taxon, err2 := taxonomy.Taxon(sequence.Taxid())
return err1 == nil && err2 == nil && taxon.IsSubCladeOf(parent)
}
return false
}
return f
}
func (taxonomy *Taxonomy) HasRequiredRank(rank string) obiseq.SequencePredicate {
if !obiutils.Contains(taxonomy.RankList(), rank) {