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Xprize update

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Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7
This commit is contained in:
Eric Coissac
2024-07-25 18:09:03 -04:00
parent 4e4fac491f
commit 67665a6b40
18 changed files with 895 additions and 29 deletions
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41
pkg/obitax/taxonomy.go
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@ -2,6 +2,8 @@ package obitax
import (
"fmt"
"regexp"
"strconv"
)
type TaxName struct {
@ -54,11 +56,43 @@ func (taxonomy *Taxonomy) AddNewTaxa(taxid, parent int, rank string, replace boo
return n, nil
}
func (taxonomy *Taxonomy) Taxon(taxid int) (*TaxNode, error) {
t, ok := (*taxonomy.nodes)[taxid]
// func (taxonomy *Taxonomy) Taxon(taxid int) (*TaxNode, error) {
// t, ok := (*taxonomy.nodes)[taxid]
// if !ok {
// a, aok := taxonomy.alias[taxid]
// if !aok {
// return nil, fmt.Errorf("Taxid %d is not part of the taxonomy", taxid)
// }
// t = a
// }
// return t, nil
// }
func (taxonomy *Taxonomy) Taxon(taxid interface{}) (*TaxNode, error) {
var itaxid int
var err error
switch v := taxid.(type) {
case int:
itaxid = v
case string:
itaxid, err = strconv.Atoi(v)
if err != nil {
re := regexp.MustCompile(`TX:(\d+)`)
parts := re.FindStringSubmatch(v)
if len(parts) != 2 {
return nil, fmt.Errorf("I cannot parse taxid from %s", v)
}
itaxid, _ = strconv.Atoi(parts[1])
}
}
t, ok := (*taxonomy.nodes)[itaxid]
if !ok {
a, aok := taxonomy.alias[taxid]
a, aok := taxonomy.alias[itaxid]
if !aok {
return nil, fmt.Errorf("Taxid %d is not part of the taxonomy", taxid)
}
@ -66,7 +100,6 @@ func (taxonomy *Taxonomy) Taxon(taxid int) (*TaxNode, error) {
}
return t, nil
}
func (taxonomy *Taxonomy) AddNewName(taxid int, name, nameclass *string) error {
node, node_err := taxonomy.Taxon(taxid)
if node_err != nil {