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Correctly handle empty files

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Former-commit-id: d166aa352ce4bf32739ddc2f7d1c9967918822fd
This commit is contained in:
Eric Coissac
2023-10-16 15:34:06 +02:00
parent e8c55a2b6b
commit 6a6a6f6f2c
4 changed files with 19 additions and 35 deletions
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5
pkg/obiformats/universal_read.go
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@ -148,6 +148,11 @@ func ReadSequencesFromFile(filename string,
file, err = Ropen(filename)
if err == ErrNoContent {
log.Infof("file %s is empty", filename)
return ReadEmptyFile(options...)
}
if err != nil {
log.Fatalf("open file error: %v", err)
return obiiter.NilIBioSequence, err