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Add managment of the taxonomy alias politic

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This commit is contained in:
Eric Coissac
2025-02-10 14:05:47 +01:00
parent e2563cd8df
commit 6a8061cc4f
16 changed files with 114 additions and 48 deletions
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9
pkg/obioptions/options.go
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@ -177,6 +177,15 @@ func LoadTaxonomyOptionSet(options *getoptions.GetOpt, required, alternatiive bo
options.Alias("a"),
options.Description("Enable the search on all alternative names and not only scientific names."))
}
options.BoolVar(obidefault.FailOnTaxonomyPtr(), "fail-on-taxonomy",
obidefault.FailOnTaxonomy(),
options.Description("Make obitools failing on error if a used taxid is not a currently valid one"),
)
options.BoolVar(obidefault.UpdateTaxidPtr(), "update-taxid", obidefault.UpdateTaxid(),
options.Description("Make obitools automatically updating the taxid that are declared merged to a newest one."),
)
}
// CLIIsDebugMode returns whether the CLI is in debug mode.