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Change obiclean algorithm for a better evaluation of ratio

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This commit is contained in:
Eric Coissac
2022-08-31 20:38:03 +02:00
parent 90ba980de6
commit 6b8f4490cf
8 changed files with 371 additions and 75 deletions
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5
pkg/obitax/sequence_predicate.go
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@ -22,7 +22,10 @@ func (taxonomy *Taxonomy) IsAValidTaxon(withAutoCorrection ...bool) obiseq.Seque
if err == nil && taxon.taxid != taxid {
if autocorrection {
sequence.SetTaxid(taxon.taxid)
log.Printf("Sequence %s : Taxid %d updated with %d", taxid, taxon.taxid)
log.Printf("Sequence %s : Taxid %d updated with %d",
sequence.Id(),
taxid,
taxon.taxid)
} else {
if _, ok := deprecatedTaxidsWarning[taxid]; !ok {
deprecatedTaxidsWarning[taxid] = true