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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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6
pkg/obichunk/options.go
View File

@ -1,7 +1,7 @@
package obichunk
import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
@ -29,8 +29,8 @@ func MakeOptions(setters []WithOption) Options {
navalue: "NA",
cacheOnDisk: false,
batchCount: 100,
batchSize: obioptions.CLIBatchSize(),
parallelWorkers: obioptions.CLIParallelWorkers(),
batchSize: obidefault.BatchSize(),
parallelWorkers: obidefault.ParallelWorkers(),
noSingleton: false,
}

4
pkg/obichunk/subchunks.go
View File

@ -6,8 +6,8 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
@ -62,7 +62,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
nworkers int) (obiiter.IBioSequence, error) {
if nworkers <= 0 {
nworkers = obioptions.CLIParallelWorkers()
nworkers = obidefault.ParallelWorkers()
}
newIter := obiiter.MakeIBioSequence()