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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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6
pkg/obiiter/batchiterator.go
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@ -10,7 +10,7 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
"github.com/tevino/abool/v2"
@ -591,7 +591,7 @@ func (iterator IBioSequence) DivideOn(predicate obiseq.SequencePredicate,
// A function that takes a predicate and a batch of sequences and returns a filtered batch of sequences.
func (iterator IBioSequence) FilterOn(predicate obiseq.SequencePredicate,
size int, sizes ...int) IBioSequence {
nworkers := obioptions.CLIReadParallelWorkers()
nworkers := obidefault.ReadParallelWorkers()
if len(sizes) > 0 {
nworkers = sizes[0]
@ -643,7 +643,7 @@ func (iterator IBioSequence) FilterOn(predicate obiseq.SequencePredicate,
func (iterator IBioSequence) FilterAnd(predicate obiseq.SequencePredicate,
size int, sizes ...int) IBioSequence {
nworkers := obioptions.CLIReadParallelWorkers()
nworkers := obidefault.ReadParallelWorkers()
if len(sizes) > 0 {
nworkers = sizes[0]