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introduce obidefault

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This commit is contained in:
Eric Coissac
2025-01-27 17:12:45 +01:00
parent 0a567f621c
commit 7c4042df6b
69 changed files with 505 additions and 479 deletions
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6
pkg/obiiter/paired.go
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@ -1,7 +1,7 @@
package obiiter
import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
log "github.com/sirupsen/logrus"
)
@ -41,8 +41,8 @@ func (iter IBioSequence) PairTo(p IBioSequence) IBioSequence {
newIter := MakeIBioSequence()
iter = iter.SortBatches().Rebatch(obioptions.CLIBatchSize())
p = p.SortBatches().Rebatch(obioptions.CLIBatchSize())
iter = iter.SortBatches().Rebatch(obidefault.BatchSize())
p = p.SortBatches().Rebatch(obidefault.BatchSize())
newIter.Add(1)