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Make sequence files recognized as a taxonomy

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This commit is contained in:
Eric Coissac
2025-03-14 14:22:22 +01:00
parent d1c31c54de
commit 8448783499
21 changed files with 657 additions and 467 deletions
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7
cmd/obitools/obitaxonomy/main.go
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@ -115,7 +115,12 @@ func main() {
}
iterator = obitaxonomy.CLITaxonRestrictions(iterator)
obitaxonomy.CLICSVTaxaWriter(iterator, true)
if obitaxonomy.CLIAsNewick() {
obitaxonomy.CLINewickWriter(iterator, true)
} else {
obitaxonomy.CLICSVTaxaWriter(iterator, true)
}
obiutils.WaitForLastPipe()

4
cmd/test/main.go
View File

@ -3,13 +3,13 @@ package main
import (
"os"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiformats"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
func main() {
obitax.DetectTaxonomyFormat(os.Args[1])
obiformats.DetectTaxonomyFormat(os.Args[1])
println(obiutils.RemoveAllExt("toto/tutu/test.txt"))
println(obiutils.Basename("toto/tutu/test.txt"))