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Reduce memomry inprint of obipcr

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Former-commit-id: bd25be2d454f083c729346a828e27f07ad1a216e
This commit is contained in:
Eric Coissac
2023-03-31 10:53:53 +02:00
parent 2c9bca5c8a
commit 84b3e4d097
5 changed files with 149 additions and 40 deletions
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5
cmd/obitools/obipcr/main.go
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@ -5,7 +5,6 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
@ -26,6 +25,8 @@ func main() {
// trace.Start(ftrace)
// defer trace.Stop()
obioptions.SetWorkerPerCore(1)
optionParser := obioptions.GenerateOptionParser(obipcr.OptionSet)
_, args := optionParser(os.Args)
@ -37,7 +38,7 @@ func main() {
os.Exit(1)
}
amplicons, _ := obipcr.PCR(sequences)
amplicons, _ := obipcr.CLIPCR(sequences)
obiconvert.CLIWriteBioSequences(amplicons, true)
obiiter.WaitForLastPipe()