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add the --min-sample-count option to obiclean.

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This commit is contained in:
Eric Coissac
2025-02-24 08:48:31 +01:00
parent 51d11aa36d
commit 8671285d02
9 changed files with 43 additions and 23 deletions
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17
pkg/obialign/fastlcs.go
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@ -21,15 +21,15 @@ func encodeValues(score, length int, out bool) uint64 {
return fo
}
func _isout(value uint64) bool {
const outmask = uint64(1) << dwsize
return (value & outmask) == 0
}
// func _isout(value uint64) bool {
// const outmask = uint64(1) << dwsize
// return (value & outmask) == 0
// }
func _lpath(value uint64) int {
const mask = uint64(1<<wsize) - 1
return int(((value + 1) ^ mask) & mask)
}
// func _lpath(value uint64) int {
// const mask = uint64(1<<wsize) - 1
// return int(((value + 1) ^ mask) & mask)
// }
func decodeValues(value uint64) (int, int, bool) {
const mask = uint64(1<<wsize) - 1
@ -57,4 +57,3 @@ func _setout(value uint64) uint64 {
var _empty = encodeValues(0, 0, false)
var _out = encodeValues(0, 30000, true)
var _notavail = encodeValues(0, 30000, false)