obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

Change path of the obitools pkg

Browse Source 
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
This commit is contained in:
Eric Coissac
2023-11-29 12:14:37 +01:00
parent 72ad84c2d4
commit 8d77cc4133
122 changed files with 1004 additions and 544 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
pkg/obialign/alignment.go
View File

@ -9,7 +9,7 @@ import (
"math"
"strings"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
// // A pool of byte slices.

4
pkg/obialign/fastlcs.go
View File

@ -1,8 +1,8 @@
package obialign
// import (
// "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
// "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
// "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
// "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
// )
const wsize = 16

4
pkg/obialign/fastlcsegf.go
View File

@ -1,8 +1,8 @@
package obialign
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
var _iupac = [26]byte{

2
pkg/obialign/fourbitsencode.go
View File

@ -1,7 +1,7 @@
package obialign
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
var _FourBitsBaseCode = []byte{0b0000,

2
pkg/obialign/is_d0_or_d1.go
View File

@ -1,6 +1,6 @@
package obialign
import "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
import "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
func abs(x int) int {
if x < 0 {

4
pkg/obialign/pairedendalign.go
View File

@ -3,8 +3,8 @@ package obialign
import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obikmer"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obikmer"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
type _PeAlignArena struct {