obitools/obitools4
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Change path of the obitools pkg

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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
This commit is contained in:
Eric Coissac
2023-11-29 12:14:37 +01:00
parent 72ad84c2d4
commit 8d77cc4133
122 changed files with 1004 additions and 544 deletions
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10
pkg/obiiter/fragment.go
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@ -3,8 +3,8 @@ package obiiter
import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
@ -25,19 +25,19 @@ func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
news := obiseq.MakeBioSequenceSlice()
sl := iterator.Get()
for _, s := range sl.Slice() {
if s.Len() <= minsize {
news = append(news, s)
} else {
for i := 0; i < s.Len(); i += step {
end := obiutils.MinInt(i+length, s.Len())
fusion:=false
fusion := false
if (s.Len() - end) < step {
end = s.Len()
fusion = true
}
frg, err := s.Subsequence(i, end, false)
if err != nil {
log.Panicln(err)
}