obitools/obitools4
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Change path of the obitools pkg

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Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
This commit is contained in:
Eric Coissac
2023-11-29 12:14:37 +01:00
parent 72ad84c2d4
commit 8d77cc4133
122 changed files with 1004 additions and 544 deletions
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6
pkg/obingslibrary/match.go
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@ -7,9 +7,9 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiapat"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
type DemultiplexMatch struct {

4
pkg/obingslibrary/ngslibrary.go
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@ -1,8 +1,8 @@
package obingslibrary
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiapat"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiapat"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
type PrimerPair struct {

6
pkg/obingslibrary/worker.go
View File

@ -1,7 +1,7 @@
package obingslibrary
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
)
type _Options struct {
@ -159,7 +159,7 @@ func ExtractBarcodeSlice(ngslibrary NGSLibrary,
opt := MakeOptions(options)
ngslibrary.Compile(opt.AllowedMismatch(),opt.AllowsIndel())
ngslibrary.Compile(opt.AllowedMismatch(), opt.AllowsIndel())
return _ExtractBarcodeSlice(ngslibrary, sequences, opt)
}
@ -169,7 +169,7 @@ func ExtractBarcodeSliceWorker(ngslibrary NGSLibrary,
opt := MakeOptions(options)
ngslibrary.Compile(opt.AllowedMismatch(),opt.AllowsIndel())
ngslibrary.Compile(opt.AllowedMismatch(), opt.AllowsIndel())
worker := func(sequences obiseq.BioSequenceSlice) obiseq.BioSequenceSlice {
return _ExtractBarcodeSlice(ngslibrary, sequences, opt)