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Creare a reorder method

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This commit is contained in:
Eric Coissac
2022-02-18 09:59:47 +01:00
parent cb125bb2a4
commit 94457f5116
1 changed files with 8 additions and 2 deletions
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10
pkg/obiseq/batchiterator.go
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@ -27,6 +27,11 @@ func (batch BioSequenceBatch) Order() int {
return batch.order return batch.order
} }
func (batch BioSequenceBatch) Reorder(newOrder int) BioSequenceBatch {
batch.order = newOrder
return batch
}
func (batch BioSequenceBatch) Slice() BioSequenceSlice { func (batch BioSequenceBatch) Slice() BioSequenceSlice {
return batch.slice return batch.slice
} }
@ -294,7 +299,7 @@ func (iterator IBioSequenceBatch) Concat(iterators ...IBioSequenceBatch) IBioSeq
if s.order > max_order { if s.order > max_order {
max_order = s.order max_order = s.order
} }
newIter.Channel() <- MakeBioSequenceBatch(s.order+previous_max, s.slice...) newIter.Channel() <- s.Reorder(s.order + previous_max)
} }
previous_max = max_order + 1 previous_max = max_order + 1
@ -305,7 +310,7 @@ func (iterator IBioSequenceBatch) Concat(iterators ...IBioSequenceBatch) IBioSeq
max_order = s.order + previous_max max_order = s.order + previous_max
} }
newIter.Channel() <- MakeBioSequenceBatch(s.order+previous_max, s.slice...) newIter.Channel() <- s.Reorder(s.order + previous_max)
} }
previous_max = max_order + 1 previous_max = max_order + 1
} }
@ -368,6 +373,7 @@ func (iterator IBioSequenceBatch) Recycle() {
log.Println("Start recycling of Bioseq objects") log.Println("Start recycling of Bioseq objects")
for iterator.Next() { for iterator.Next() {
// iterator.Get()
batch := iterator.Get() batch := iterator.Get()
for _, seq := range batch.Slice() { for _, seq := range batch.Slice() {
(&seq).Recycle() (&seq).Recycle()