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Add capacity to obidistribute to save gzipped files

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This commit is contained in:
Eric Coissac
2023-02-17 12:52:19 +01:00
parent 6fd426d8be
commit 9554a32490
9 changed files with 124 additions and 30 deletions
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14
pkg/obiformats/universal_write.go
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@ -7,6 +7,7 @@ import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
)
@ -55,18 +56,13 @@ func WriteSequencesToFile(iterator obiiter.IBioSequence,
filename string,
options ...WithOption) (obiiter.IBioSequence, error) {
var file *os.File
var err error
opt := MakeOptions(options)
if opt.AppendFile() {
log.Debug("Open files in appending mode")
file, err = os.OpenFile(filename,
os.O_APPEND|os.O_CREATE|os.O_WRONLY, 0644)
} else {
file, err = os.Create(filename)
}
file, err := goutils.OpenWritingFile(filename,
opt.CompressedFile(),
opt.AppendFile(),
)
if err != nil {
log.Fatalf("open file error: %v", err)