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adds a rule to update packages and push the corresponding updates module files

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Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
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Eric Coissac
2023-03-21 22:02:18 +07:00
parent 7ed567fbad
commit 98eac2360c
4 changed files with 71 additions and 17 deletions
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Release-notes.md
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# OBITools release notes
## On going changes
## Ongoing changes
### New features
- Add the possibility for looking pattern with indels. This has been added to `obimultiplex`
through the `--with-indels` option.
### Enhancement
- Add support for IUPAC DNA code into the DNA sequence LCS computation and an end free gap mode.
This impact `obitag` and `obimultiplex` in the `--with-indels` mode.
- Print the synopsis of the command when an error is done by the user at typing the command
### Corrected bugs
- Better managment of non existing files. The produced error message is not yet perfectly clear.
- Better management of non-existing files. The produced error message is not yet perfectly clear.
- Patch a bug leading with some programs to crash because of : "*empty batch pushed on the channel*"
- Patch a bug when directory names are used as input data name preventing the system to actually
analyze the collected files.
- Make the `--help` or `-h` options working when mandatory options are declared
- In `obimultiplex` correct a bug leading to a wrong report of the count of reverse mismatch for
sequences in reverse direction.
## March 7th, 2023. Release 4.0.1