mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
adds installation instructions
This commit is contained in:
41
README.md
41
README.md
@ -1,2 +1,41 @@
|
|||||||
# obitools
|
# obitools V4
|
||||||
|
|
||||||
|
*OBITools V4* is the new version of *OBITools*. They are closer to *OBITools2* than to *OBITools3*.
|
||||||
|
They are implemented in *GO* and are tens of times faster than OBITools2.
|
||||||
|
|
||||||
|
The git for *OBITools4* is available at :
|
||||||
|
|
||||||
|
> https://metabarcoding.org/obitools4
|
||||||
|
|
||||||
|
## Installing *OBITools V4*
|
||||||
|
|
||||||
|
An installation script that compiles the new *OBITools* on your Unix-like system is available online.
|
||||||
|
The easiest way to run it is to copy and paste the following command into your terminal
|
||||||
|
|
||||||
|
```{bash}
|
||||||
|
curl -L https://metabarcoding.org/obitools4/install.sh | bash
|
||||||
|
```
|
||||||
|
|
||||||
|
By default, the script installs the *OBITools* commands and other associated files into the `/usr/local` directory.
|
||||||
|
The names of the commands in the new *OBITools4* are mostly identical to those in *OBITools2*.
|
||||||
|
Therefore, installing the new *OBITools* may hide or delete the old ones. If you want both versions to be
|
||||||
|
available on your system, the installation script offers two options:
|
||||||
|
|
||||||
|
|
||||||
|
Translated with www.DeepL.com/Translator (free version)
|
||||||
|
> -i, --install-dir Directory where obitools are installed
|
||||||
|
> (as example use `/usr/local` not `/usr/local/bin`).
|
||||||
|
>
|
||||||
|
> -p, --obitools-prefix Prefix added to the obitools command names if you
|
||||||
|
> want to have several versions of obitools at the
|
||||||
|
> same time on your system (as example `-p g` will produce
|
||||||
|
> `gobigrep` command instead of `obigrep`).
|
||||||
|
|
||||||
|
You can use these options by following the installation command:
|
||||||
|
|
||||||
|
```{bash}
|
||||||
|
curl -L https://metabarcoding.org/obitools4/install.sh | \
|
||||||
|
bash -s -- --install-dir test_install --obitools-prefix k
|
||||||
|
```
|
||||||
|
|
||||||
|
In this case, the binaries will be installed in the `test_install` directory and all command names will be prefixed with the letter `k`. Thus `obigrep` will be named `kobigrep`.
|
||||||
|
Reference in New Issue
Block a user