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Refactoring of the default values

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This commit is contained in:
Eric Coissac
2025-01-24 18:09:59 +01:00
parent 3137c1f841
commit 9acb4a85a8
50 changed files with 337 additions and 166 deletions
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4
pkg/obiformats/csv_read.go
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@ -7,8 +7,8 @@ import (
"path"
"strings"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
"github.com/goccy/go-json"
@ -143,7 +143,7 @@ func ReadCSV(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, err
go _ParseCsvFile(opt.Source(),
reader,
out,
byte(obioptions.InputQualityShift()),
obidefault.ReadQualitiesShift(),
opt.BatchSize())
go func() {