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Refactoring of the default values

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This commit is contained in:
Eric Coissac
2025-01-24 18:09:59 +01:00
parent 3137c1f841
commit 9acb4a85a8
50 changed files with 337 additions and 166 deletions
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4
pkg/obiformats/csv_writer.go
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@ -3,7 +3,7 @@ package obiformats
import (
"fmt"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
@ -54,7 +54,7 @@ func CSVSequenceRecord(sequence *obiseq.BioSequence, opt Options) []string {
l := sequence.Len()
q := sequence.Qualities()
ascii := make([]byte, l)
quality_shift := obioptions.OutputQualityShift()
quality_shift := obidefault.WriteQualitiesShift()
for j := 0; j < l; j++ {
ascii[j] = uint8(q[j]) + uint8(quality_shift)
}