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Refactoring of the default values

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This commit is contained in:
Eric Coissac
2025-01-24 18:09:59 +01:00
parent 3137c1f841
commit 9acb4a85a8
50 changed files with 337 additions and 166 deletions
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4
pkg/obiseq/biosequence.go
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@ -18,7 +18,7 @@ import (
"sync/atomic"
"unsafe"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obidefault"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
log "github.com/sirupsen/logrus"
@ -287,7 +287,7 @@ func (s *BioSequence) Qualities() Quality {
//
// Returns a string representing the qualities of the BioSequence after applying the shift.
func (s *BioSequence) QualitiesString() string {
quality_shift := obioptions.OutputQualityShift()
quality_shift := obidefault.WriteQualitiesShift()
qual := s.Qualities()
qual_ascii := make([]byte, len(qual))