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Refactoring of the default values

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This commit is contained in:
Eric Coissac
2025-01-24 18:09:59 +01:00
parent 3137c1f841
commit 9acb4a85a8
50 changed files with 337 additions and 166 deletions
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8
pkg/obitaxformat/taxonomy_read.go
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@ -5,6 +5,7 @@ import (
"os"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitaxformat/csvtaxdump"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitaxformat/ncbitaxdump"
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
"github.com/gabriel-vasile/mimetype"
@ -62,7 +63,7 @@ func DetectTaxonomyFormat(path string) (TaxonomyLoader, error) {
switch mimetype.String() {
case "text/csv":
return LoadCSVTaxonomy, nil
return csvtaxdump.LoadCSVTaxonomy, nil
case "application/x-tar":
return DetectTaxonomyTarFormat(path)
}
@ -73,11 +74,6 @@ func DetectTaxonomyFormat(path string) (TaxonomyLoader, error) {
return nil, nil
}
func LoadCSVTaxonomy(path string, onlysn bool) (*obitax.Taxonomy, error) {
return nil, nil
}
func LoadTaxonomy(path string, onlysn bool) (*obitax.Taxonomy, error) {
loader, err := DetectTaxonomyFormat(path)