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First attempt for obiconsensus... The graph traversing algorithm is too simple
Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
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33
cmd/obitools/obiconsensus/main.go
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33
cmd/obitools/obiconsensus/main.go
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package main
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import (
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"os"
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log "github.com/sirupsen/logrus"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconsensus"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
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)
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func main() {
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optionParser := obioptions.GenerateOptionParser(obiconvert.OptionSet)
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_, args := optionParser(os.Args)
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obiconvert.SetFullFileBatch()
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fs, err := obiconvert.CLIReadBioSequences(args...)
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if err != nil {
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log.Errorf("Cannot open file (%v)", err)
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os.Exit(1)
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}
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consensus := obiconsensus.Consensus(fs, 0.99)
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obiconvert.CLIWriteBioSequences(consensus, true)
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obiiter.WaitForLastPipe()
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}
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