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First attempt for obiconsensus... The graph traversing algorithm is too simple

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Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
This commit is contained in:
Eric Coissac
2023-03-27 19:51:10 +07:00
parent d5e84ec676
commit a33e471b39
17 changed files with 868 additions and 23 deletions
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4
pkg/obiformats/batch_of_files_reader.go
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@ -16,7 +16,7 @@ func ReadSequencesBatchFromFiles(filenames []string,
reader = ReadSequencesFromFile
}
batchiter := obiiter.MakeIBioSequence(0)
batchiter := obiiter.MakeIBioSequence()
nextCounter := obiutils.AtomicCounter()
batchiter.Add(concurrent_readers)
@ -48,6 +48,8 @@ func ReadSequencesBatchFromFiles(filenames []string,
log.Printf("Start reading of file : %s", filename)
for iter.Next() {
batch := iter.Get()
batchiter.Push(batch.Reorder(nextCounter()))