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First attempt for obiconsensus... The graph traversing algorithm is too simple

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Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
This commit is contained in:
Eric Coissac
2023-03-27 19:51:10 +07:00
parent d5e84ec676
commit a33e471b39
17 changed files with 868 additions and 23 deletions
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4
pkg/obiformats/universal_read.go
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@ -5,11 +5,13 @@ import (
"compress/gzip"
"io"
"os"
"path"
"strings"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
)
func GuessSeqFileType(firstline string) string {
@ -49,6 +51,8 @@ func ReadSequencesFromFile(filename string,
var greader io.Reader
var err error
options = append(options, OptionsSource(obiutils.RemoveAllExt((path.Base(filename)))))
file, err = os.Open(filename)
if err != nil {