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Start to use leveled log

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This commit is contained in:
Eric Coissac
2022-02-24 12:14:52 +01:00
parent f18cc034bb
commit abcf02e488
43 changed files with 156 additions and 67 deletions
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11
pkg/obiiter/batchiterator.go
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@ -2,11 +2,12 @@ package obiiter
import (
"fmt"
"log"
"sync"
"sync/atomic"
"time"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"github.com/tevino/abool/v2"
)
@ -413,7 +414,7 @@ func (iterator IBioSequenceBatch) Rebatch(size int, sizes ...int) IBioSequenceBa
func (iterator IBioSequenceBatch) Recycle() {
log.Println("Start recycling of Bioseq objects")
log.Debugln("Start recycling of Bioseq objects")
recycled := 0
for iterator.Next() {
// iterator.Get()
@ -424,7 +425,7 @@ func (iterator IBioSequenceBatch) Recycle() {
}
batch.Recycle()
}
log.Printf("End of the recycling of %d Bioseq objects", recycled)
log.Debugf("End of the recycling of %d Bioseq objects", recycled)
}
func (iterator IBioSequenceBatch) Count(recycle bool) (int, int, int) {
@ -432,7 +433,7 @@ func (iterator IBioSequenceBatch) Count(recycle bool) (int, int, int) {
reads := 0
nucleotides := 0
log.Println("Start counting of Bioseq objects")
log.Debugln("Start counting of Bioseq objects")
for iterator.Next() {
// iterator.Get()
batch := iterator.Get()
@ -447,7 +448,7 @@ func (iterator IBioSequenceBatch) Count(recycle bool) (int, int, int) {
}
batch.Recycle()
}
log.Printf("End of the counting of %d Bioseq objects", variants)
log.Debugf("End of the counting of %d Bioseq objects", variants)
return variants, reads, nucleotides
}