obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

some minor improvements

Browse Source
This commit is contained in:
Eric Coissac
2024-11-27 13:36:06 +01:00
parent 40fb4e9767
commit ad2461a656
3 changed files with 6 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
Release-notes.md
View File

@ -7,6 +7,10 @@
- In `obipairing`, correct the stats `seq_a_single` and `seq_b_single` when - In `obipairing`, correct the stats `seq_a_single` and `seq_b_single` when
on right alignment mode on right alignment mode
- Not really a bug but the memory impact of `obiuniq` has been reduced by reducing
the batch size and not reading the qualities from the fastq files as `obiuniq`
is producing only fasta output without qualities.
### New features ### New features
- Most of the time obitools identify automatically sequence file format. But - Most of the time obitools identify automatically sequence file format. But

1
cmd/obitools/obiuniq/main.go
View File

@ -30,6 +30,7 @@ func main() {
// trace.Start(ftrace) // trace.Start(ftrace)
// defer trace.Stop() // defer trace.Stop()
obioptions.SetBatchSize(10)
obioptions.SetReadQualities(false) obioptions.SetReadQualities(false)
optionParser := obioptions.GenerateOptionParser(obiuniq.OptionSet) optionParser := obioptions.GenerateOptionParser(obiuniq.OptionSet)

2
pkg/obioptions/version.go
View File

@ -7,7 +7,7 @@ import (
// TODO: The version number is extracted from git. This induces that the version // TODO: The version number is extracted from git. This induces that the version
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "d29a56d" var _Commit = "40fb4e9"
var _Version = "Release 4.3.0" var _Version = "Release 4.3.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.