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Change some comments

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This commit is contained in:
Eric Coissac
2022-08-21 14:47:22 +02:00
parent 10663bf79c
commit ad4a861261
2 changed files with 6 additions and 2 deletions
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6
pkg/obichunk/unique.go
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@ -10,7 +10,7 @@ import (
)
// Runs dereplication algorithm on a obiiter.IBioSequenceBatch
// iterator.
// iterator.
func IUniqueSequence(iterator obiiter.IBioSequenceBatch,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
@ -86,6 +86,7 @@ func IUniqueSequence(iterator obiiter.IBioSequenceBatch,
next = obiiter.MakeIBioSequenceBatch(opts.BufferSize())
iUnique.Add(1)
go ff(next,
obiseq.AnnotationClassifier(cat[icat], na),
icat)
@ -96,13 +97,16 @@ func IUniqueSequence(iterator obiiter.IBioSequenceBatch,
batch := input.Get()
if icat < 0 || len(batch.Slice()) == 1 {
// No more sub classification of sequence or only a single sequence
if opts.NoSingleton() && len(batch.Slice()) == 1 && batch.Slice()[0].Count() == 1 {
// We remove singleton from output
batch.Slice()[0].Recycle()
batch.Recycle()
} else {
iUnique.Push(batch.Reorder(nextOrder()))
}
} else {
// A new step of classification must du realized
next.Push(batch.Reorder(o))
o++
}

2
pkg/obitools/obiuniq/unique.go
View File

@ -30,7 +30,7 @@ func Unique(sequences obiiter.IBioSequenceBatch) obiiter.IBioSequenceBatch {
}
//
// Considers if sequences observed a singletime in the dataset have to
// Considers if sequences observed a single time in the dataset have to
// be conserved in the output
//
// --no-singleton