obitools/obitools4
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New install script updated for github

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Eric Coissac
2024-07-29 14:35:21 +02:00
parent 2247c3bc0a
commit bc1aaaf7d9
3 changed files with 10 additions and 8 deletions
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6
README.md
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@ -5,7 +5,7 @@ They are implemented in *GO* and are tens of times faster than OBITools2.
The git for *OBITools4* is available at : The git for *OBITools4* is available at :
> https://metabarcoding.org/obitools4 > https://github.com/metabarcoding/obitools4
## Installing *OBITools V4* ## Installing *OBITools V4*
@ -13,7 +13,7 @@ An installation script that compiles the new *OBITools* on your Unix-like system
The easiest way to run it is to copy and paste the following command into your terminal The easiest way to run it is to copy and paste the following command into your terminal
```{bash} ```{bash}
curl -L https://metabarcoding.org/obitools4/install.sh | bash curl -L https://raw.githubusercontent.com/metabarcoding/obitools4/master/install_obitools.sh | bash
``` ```
By default, the script installs the *OBITools* commands and other associated files into the `/usr/local` directory. By default, the script installs the *OBITools* commands and other associated files into the `/usr/local` directory.
@ -33,7 +33,7 @@ available on your system, the installation script offers two options:
You can use these options by following the installation command: You can use these options by following the installation command:
```{bash} ```{bash}
curl -L https://metabarcoding.org/obitools4/install.sh | \ curl -L https://raw.githubusercontent.com/metabarcoding/obitools4/master/install_obitools.sh | \
bash -s -- --install-dir test_install --obitools-prefix k bash -s -- --install-dir test_install --obitools-prefix k
``` ```

8
install_obitools.sh
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@ -4,7 +4,7 @@ INSTALL_DIR="/usr/local"
OBITOOLS_PREFIX="" OBITOOLS_PREFIX=""
# default values # default values
URL="https://go.dev/dl/" URL="https://go.dev/dl/"
OBIURL4="https://git.metabarcoding.org/obitools/obitools4/obitools4/-/archive/master/obitools4-master.tar.gz" OBIURL4="https://github.com/metabarcoding/obitools4/archive/refs/heads/master.zip"
INSTALL_DIR="/usr/local" INSTALL_DIR="/usr/local"
OBITOOLS_PREFIX="" OBITOOLS_PREFIX=""
@ -106,8 +106,10 @@ curl "$GOURL" \
PATH="$(pwd)/go/bin:$PATH" PATH="$(pwd)/go/bin:$PATH"
export PATH export PATH
curl -L "$OBIURL4" \ curl -L "$OBIURL4" > master.zip
| tar zxf - unzip master.zip
echo "Install OBITOOLS from : $OBIURL4"
cd obitools4-master || exit cd obitools4-master || exit

4
pkg/obioptions/version.go
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@ -7,8 +7,8 @@ import (
// TODO: The version number is extracted from git. This induces that the version // TODO: The version number is extracted from git. This induces that the version
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "4d86483" var _Commit = "2247c3b"
var _Version = "Release 4.2.0" var _Version = ""
// Version returns the version of the obitools package. // Version returns the version of the obitools package.
// //