adds missing file

pkg/obitools/obimultiplex/demultiplex.go

@@ -0,0 +1,40 @@
+package obimultiplex
+
+import (
+	"log"
+
+	"git.metabarcoding.org/lecasofts/go/obitools/pkg/obingslibrary"
+	"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
+	"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
+)
+
+func IExtractBarcodeBatches(iterator obiseq.IBioSequenceBatch) (obiseq.IBioSequenceBatch, error) {
+
+	opts := make([]obingslibrary.WithOption, 0, 10)
+
+	opts = append(opts,
+		obingslibrary.OptionAllowedMismatches(CLIAllowedMismatch()),
+		obingslibrary.OptionUnidentified(CLIUnidentifiedFileName()),
+		obingslibrary.OptionDiscardErrors(!CLIConservedErrors()),
+		obingslibrary.OptionParallelWorkers(obioptions.CLIParallelWorkers()),
+		obingslibrary.OptionBatchSize(obioptions.CLIBatchSize()),
+		obingslibrary.OptionBufferSize(obioptions.CLIBufferSize()),
+	)
+
+	ngsfilter, err := CLINGSFIlter()
+	if err != nil {
+		log.Fatalf("%v", err)
+	}
+
+	worker := obingslibrary.ExtractBarcodeSliceWorker(ngsfilter, opts...)
+
+	newIter := iterator.MakeISliceWorker(worker)
+
+	if !CLIConservedErrors() {
+		newIter = newIter.Rebatch(obioptions.CLIBatchSize())
+	}
+
+	log.Printf("Sequence demultiplexing using %d workers\n", obioptions.CLIParallelWorkers())
+
+	return newIter, nil
+}