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add the --skip-empty option

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Former-commit-id: ec9cb0ecaf90a61bf9289cf4c089b5cc2fcb65a5
This commit is contained in:
Eric Coissac
2023-07-17 14:24:02 +02:00
parent b44fcfb2a0
commit be47ec909c
10 changed files with 65 additions and 12 deletions
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5
cmd/obitools/obiclean/main.go
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@ -2,6 +2,7 @@ package main
import (
"os"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
@ -19,11 +20,11 @@ func main() {
fs, err := obiconvert.CLIReadBioSequences(args...)
if err != nil {
log.Errorf("Cannot open file (%v)",err)
log.Errorf("Cannot open file (%v)", err)
os.Exit(1)
}
cleaned := obiclean.IOBIClean(fs)
cleaned := obiclean.CLIOBIClean(fs)
obiconvert.CLIWriteBioSequences(cleaned, true)