obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

first version of obidemerge, obijoin and a new filter for obicleandb but to be finnished

Browse Source 
Former-commit-id: 8a1ed26e5548c30db75644c294d478ec4d753f19
This commit is contained in:
Eric Coissac
2024-07-10 15:21:42 +02:00
parent bd855c4965
commit c7ed47e110
24 changed files with 2712 additions and 19 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
pkg/obiseq/merge.go
View File

@ -49,6 +49,8 @@ func MakeStatsOnDescription(descriptor string) StatsOnDescription {
}
}
var _merge_prefix = "merged_"
// StatsOnSlotName returns the name of the slot that summarizes statistics of occurrence for a given attribute.
//
// Parameters:
@ -57,7 +59,7 @@ func MakeStatsOnDescription(descriptor string) StatsOnDescription {
// Return type:
// - string
func StatsOnSlotName(key string) string {
return "merged_" + key
return _merge_prefix + key
}
// HasStatsOn tests if the sequence has already a slot summarizing statistics of occurrence for a given attribute.
@ -115,12 +117,12 @@ func (sequence *BioSequence) StatsOn(desc StatsOnDescription, na string) StatsOn
}
}
default:
stats = make(StatsOnValues, 100)
stats = make(StatsOnValues, 10)
annotations[mkey] = stats
newstat = true
}
} else {
stats = make(StatsOnValues, 100)
stats = make(StatsOnValues, 10)
annotations[mkey] = stats
newstat = true
}
@ -165,7 +167,7 @@ func (sequence *BioSequence) StatsPlusOne(desc StatsOnDescription, toAdd *BioSeq
log.Fatalf("Trying to make stats on a float value (%v : %T)", value, value)
}
default:
log.Fatalf("Trying to make stats on a none string, integer or boolean value (%v : %T)", value, value)
log.Fatalf("Trying to make stats not on a string, integer or boolean value (%v : %T)", value, value)
}
retval = true
}
@ -234,7 +236,7 @@ func (sequence *BioSequence) Merge(tomerge *BioSequence, na string, inplace bool
if tomerge.HasAnnotation() {
ma := tomerge.Annotations()
for k, va := range annotations {
if !strings.HasPrefix(k, "merged_") {
if !strings.HasPrefix(k, _merge_prefix) {
vm, ok := ma[k]
if ok {
switch vm := vm.(type) {
@ -255,7 +257,7 @@ func (sequence *BioSequence) Merge(tomerge *BioSequence, na string, inplace bool
}
} else {
for k := range annotations {
if !strings.HasPrefix(k, "merged_") {
if !strings.HasPrefix(k, _merge_prefix) {
delete(annotations, k)
}
}