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Patch a bug in the pair-end alignement in case of equality between scores.

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Former-commit-id: bbdb761a98b76f2421d1f0a72960e72b13b6e626
This commit is contained in:
Eric Coissac
2023-11-24 09:59:29 +01:00
parent 72e5855ee9
commit ce66b0af2f
3 changed files with 101 additions and 36 deletions
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6
pkg/obiseq/subseq_test.go
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@ -46,15 +46,15 @@ func TestSubsequence(t *testing.T) {
// Test case 3: Subsequence with from greater than to and non-circular
seq3 := NewBioSequence("ID1", []byte("ATCG"), "")
_, err3 := seq3.Subsequence(3, 1, false)
assert.EqualError(t, err3, "from greater than to")
assert.EqualError(t, err3, "from: 3 greater than to: 1")
// Test case 4: Subsequence with from out of bounds
seq4 := NewBioSequence("ID1", []byte("ATCG"), "")
_, err4 := seq4.Subsequence(-1, 2, false)
assert.EqualError(t, err4, "from out of bounds")
assert.EqualError(t, err4, "from out of bounds -1 < 0")
// Test case 5: Subsequence with to out of bounds
seq5 := NewBioSequence("ID1", []byte("ATCG"), "")
_, err5 := seq5.Subsequence(2, 5, false)
assert.EqualError(t, err5, "to out of bounds")
assert.EqualError(t, err5, "to out of bounds 5 > 4")
}