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Small bug in sequence counting on merge

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This commit is contained in:
Eric Coissac
2022-05-30 16:28:59 +02:00
parent f14860a486
commit cf5b4baa54
5 changed files with 21 additions and 4 deletions
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3
pkg/obiseq/merge.go
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@ -37,6 +37,7 @@ func (sequence *BioSequence) StatsOn(key string, na string) StatsOnValues {
newstat = false
case map[string]interface{}:
stats = make(StatsOnValues, len(istat))
newstat = false
var err error
for k, v := range istat {
stats[k], err = goutils.InterfaceToInt(v)
@ -161,7 +162,7 @@ func (sequences BioSequenceSlice) Merge(na string, statsOn []string) *BioSequenc
seq.SetQualities(nil)
if len(sequences) == 1 {
seq.Annotations()["count"] = 1
seq.Annotations()["count"] = seq.Count()
for _, v := range statsOn {
seq.StatsOn(v, na)
}