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Finalyse the obimultiplex with indels

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Former-commit-id: cef0ac39dac0e02d16d4bd321966a0f8a67f2c85
This commit is contained in:
Eric Coissac
2023-03-21 22:01:02 +07:00
parent 27d6c60e25
commit d09011fac2
3 changed files with 10 additions and 2 deletions
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7
pkg/obialign/fastlcsegf.go
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@ -49,6 +49,10 @@ func FastLCSEGFScoreByte(bA, bB []byte, maxError int, endgapfree bool, buffer *[
delta := lA - lB
if endgapfree {
maxError += delta
}
// The difference of length is larger the maximum allowed errors
if delta > maxError {
return -1, -1
@ -170,6 +174,9 @@ func FastLCSEGFScoreByte(bA, bB []byte, maxError int, endgapfree bool, buffer *[
// score = _setout(score)
// }
if x == 0 || x == (even-1) {
score = _setout(score)
}
// // BEGINNING OF DEBUG CODE //
// if i < 2 && j < 5 {
// log.Debugf("[%d,%d]\n",i,j)