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rename goutils to obiutils

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Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
This commit is contained in:
Eric Coissac
2023-03-24 10:25:12 +07:00
parent 42aae88520
commit d5e84ec676
33 changed files with 245 additions and 156 deletions
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4
pkg/obitax/sequence_predicate.go
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@ -3,8 +3,8 @@ package obitax
import (
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
)
func (taxonomy *Taxonomy) IsAValidTaxon(withAutoCorrection ...bool) obiseq.SequencePredicate {
@ -59,7 +59,7 @@ func (taxonomy *Taxonomy) IsSubCladeOf(taxid int) obiseq.SequencePredicate {
func (taxonomy *Taxonomy) HasRequiredRank(rank string) obiseq.SequencePredicate {
if !goutils.Contains(taxonomy.RankList(), rank) {
if !obiutils.Contains(taxonomy.RankList(), rank) {
log.Fatalf("%s is not a valid rank (allowed ranks are %v)",
rank,
taxonomy.RankList())

4
pkg/obitax/sequence_workers.go
View File

@ -1,14 +1,14 @@
package obitax
import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiutils"
log "github.com/sirupsen/logrus"
)
func (taxonomy *Taxonomy) MakeSetTaxonAtRankWorker(rank string) obiseq.SeqWorker {
if !goutils.Contains(taxonomy.RankList(), rank) {
if !obiutils.Contains(taxonomy.RankList(), rank) {
log.Fatalf("%s is not a valid rank (allowed ranks are %v)",
rank,
taxonomy.RankList())