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Refactoring codes for removing buffer size options. An some other changes...

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Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
This commit is contained in:
Eric Coissac
2023-03-07 11:12:13 +07:00
parent 9811e440b8
commit d88de15cdc
52 changed files with 1172 additions and 421 deletions
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22
pkg/obioptions/options.go
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@ -11,12 +11,11 @@ import (
)
var _Debug = false
var _ParallelWorkers = runtime.NumCPU() * 2 - 1
var _ParallelWorkers = runtime.NumCPU()*2 - 1
var _MaxAllowedCPU = runtime.NumCPU()
var _BufferSize = 1
var _BatchSize = 5000
type ArgumentParser func([]string) (*getoptions.GetOpt, []string, error)
type ArgumentParser func([]string) (*getoptions.GetOpt, []string)
func GenerateOptionParser(optionset ...func(*getoptions.GetOpt)) ArgumentParser {
@ -38,16 +37,20 @@ func GenerateOptionParser(optionset ...func(*getoptions.GetOpt)) ArgumentParser
o(options)
}
return func(args []string) (*getoptions.GetOpt, []string, error) {
return func(args []string) (*getoptions.GetOpt, []string) {
remaining, err := options.Parse(args[1:])
if err != nil {
log.Fatalf("Error on the commande line : %v",err)
}
// Setup the maximum number of CPU usable by the program
runtime.GOMAXPROCS(_MaxAllowedCPU)
if options.Called("max-cpu") {
log.Printf("CPU number limited to %d", _MaxAllowedCPU)
if ! options.Called("workers") {
_ParallelWorkers=_MaxAllowedCPU * 2 - 1
if !options.Called("workers") {
_ParallelWorkers = _MaxAllowedCPU*2 - 1
log.Printf("Number of workers set %d", _ParallelWorkers)
}
}
@ -67,7 +70,7 @@ func GenerateOptionParser(optionset ...func(*getoptions.GetOpt)) ArgumentParser
log.Debugln("Switch to debug level logging")
}
return options, remaining, err
return options, remaining
}
}
@ -88,11 +91,6 @@ func CLIMaxCPU() int {
return _MaxAllowedCPU
}
// CLIBufferSize returns the expeted channel buffer size for obitools
func CLIBufferSize() int {
return _BufferSize
}
// CLIBatchSize returns the expeted size of the sequence batches
func CLIBatchSize() int {
return _BatchSize