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Refactoring codes for removing buffer size options. An some other changes...

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Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
This commit is contained in:
Eric Coissac
2023-03-07 11:12:13 +07:00
parent 9811e440b8
commit d88de15cdc
52 changed files with 1172 additions and 421 deletions
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21
pkg/obiseq/eval.go
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@ -4,22 +4,21 @@ import (
"context"
"fmt"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obieval"
log "github.com/sirupsen/logrus"
)
func Expression(expression string) func(*BioSequence) (interface{},error) {
func Expression(expression string) func(*BioSequence) (interface{}, error) {
exp, err := obieval.OBILang.NewEvaluable(expression)
exp, err := OBILang.NewEvaluable(expression)
if err != nil {
log.Fatalf("Error in the expression : %s", expression)
}
f := func(sequence *BioSequence) (interface{},error) {
f := func(sequence *BioSequence) (interface{}, error) {
return exp(context.Background(),
map[string]interface{}{
"annotations": sequence.Annotations(),
"sequence": sequence,
"annotations": sequence.Annotations(),
"sequence": sequence,
},
)
}
@ -30,14 +29,14 @@ func Expression(expression string) func(*BioSequence) (interface{},error) {
func EditIdWorker(expression string) SeqWorker {
e := Expression(expression)
f := func(sequence *BioSequence) *BioSequence {
v,err := e(sequence)
v, err := e(sequence)
if err != nil {
log.Fatalf("Expression '%s' cannot be evaluated on sequence %s",
expression,
sequence.Id())
}
sequence.SetId(fmt.Sprintf("%v",v))
sequence.SetId(fmt.Sprintf("%v", v))
return sequence
}
@ -47,16 +46,16 @@ func EditIdWorker(expression string) SeqWorker {
func EditAttributeWorker(key string, expression string) SeqWorker {
e := Expression(expression)
f := func(sequence *BioSequence) *BioSequence {
v,err := e(sequence)
v, err := e(sequence)
if err != nil {
log.Fatalf("Expression '%s' cannot be evaluated on sequence %s",
expression,
sequence.Id())
}
sequence.SetAttribute(key,v)
sequence.SetAttribute(key, v)
return sequence
}
return f
}
}