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Change the memory management for thee BuildAlignment function

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This commit is contained in:
Eric Coissac
2022-01-15 19:10:16 +01:00
parent e8fff6477b
commit e1b7e1761c
11 changed files with 145 additions and 1329 deletions
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2
cmd/obitools/obiconvert/main.go
View File

@ -14,5 +14,5 @@ func main() {
_, args, _ := optionParser(os.Args)
fs, _ := obiconvert.ReadBioSequencesBatch(args...)
obiconvert.WriteBioSequencesBatch(fs,true)
obiconvert.WriteBioSequencesBatch(fs, true)
}

14
cmd/obitools/obipairing/main.go
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@ -1,7 +1,9 @@
package main
import (
"log"
"os"
"runtime/trace"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
@ -19,12 +21,12 @@ func main() {
// defer pprof.StopCPUProfile()
// go tool trace cpu.trace
// ftrace, err := os.Create("cpu.trace")
// if err != nil {
// log.Fatal(err)
// }
// trace.Start(ftrace)
// defer trace.Stop()
ftrace, err := os.Create("cpu.trace")
if err != nil {
log.Fatal(err)
}
trace.Start(ftrace)
defer trace.Stop()
optionParser := obioptions.GenerateOptionParser(obipairing.OptionSet)

2
cmd/obitools/obipcr/main.go
View File

@ -30,5 +30,5 @@ func main() {
sequences, _ := obiconvert.ReadBioSequencesBatch(args...)
amplicons, _ := obipcr.PCR(sequences)
obiconvert.WriteBioSequencesBatch(amplicons,true)
obiconvert.WriteBioSequencesBatch(amplicons, true)
}