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Change the memory management for thee BuildAlignment function

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This commit is contained in:
Eric Coissac
2022-01-15 19:10:16 +01:00
parent e8fff6477b
commit e1b7e1761c
11 changed files with 145 additions and 1329 deletions
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7
pkg/obialign/pairedendalign.go
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@ -61,11 +61,10 @@ func _GetMatrixFrom(matrix *[]int, lenA, a, b int) (int, int, int) {
func _PairingScorePeAlign(baseA, qualA, baseB, qualB byte) int {
partMatch := _NucPartMatch[baseA&31][baseB&31]
// log.Printf("id : %f A : %s %d B : %s %d\n", part_match, string(baseA), qualA, string(baseB), qualB)
switch {
case partMatch == 1:
// log.Printf("match\n")
switch int(partMatch * 100) {
case 100:
return _NucScorePartMatchMatch[qualA][qualB]
case partMatch == 0:
case 0:
return _NucScorePartMatchMismatch[qualA][qualB]
default:
return int(partMatch*float64(_NucScorePartMatchMatch[qualA][qualB]) +