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Patch a bug in registering merged taxa

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This commit is contained in:
Eric Coissac
2025-02-10 11:42:46 +01:00
parent f2e81adf95
commit e2563cd8df
3 changed files with 4 additions and 3 deletions
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2
pkg/obioptions/version.go
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@ -8,7 +8,7 @@ import (
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "773e549" var _Commit = "f2e81ad"
var _Version = "Release 4.2.0" var _Version = "Release 4.2.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.

2
pkg/obitax/ncbitaxdump_read.go
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@ -131,7 +131,7 @@ func loadMergedTable(reader io.Reader, taxonomy *Taxonomy) int {
oldtaxid := strings.TrimSpace(record[0]) oldtaxid := strings.TrimSpace(record[0])
newtaxid := strings.TrimSpace(record[1]) newtaxid := strings.TrimSpace(record[1])
taxonomy.AddAlias(newtaxid, oldtaxid, false) taxonomy.AddAlias(oldtaxid, newtaxid, false)
} }
return n return n

3
pkg/obitax/taxonset.go
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@ -151,7 +151,8 @@ func (set *TaxonSet) Alias(id *string, taxon *Taxon) {
if original == nil { if original == nil {
log.Fatalf("Original taxon %v is not part of taxon set", id) log.Fatalf("Original taxon %v is not part of taxon set", id)
} }
set.set[id] = taxon.Node
set.set[id] = original.Node
set.nalias++ set.nalias++
} }