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small things...

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This commit is contained in:
Eric Coissac
2023-02-01 08:14:29 +01:00
parent 3a151fc0a0
commit e3d4da2859
1 changed files with 17 additions and 1 deletions
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18
cmd/test/main.go
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@ -7,6 +7,7 @@ import (
"runtime/trace" "runtime/trace"
"cloudeng.io/algo/lcs" "cloudeng.io/algo/lcs"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/goutils"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obialign"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq" "git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
) )
@ -89,6 +90,21 @@ func main() {
// B = "ttttt" // B = "ttttt"
sA := obiseq.NewBioSequence("A", []byte(A), "") sA := obiseq.NewBioSequence("A", []byte(A), "")
sB := obiseq.NewBioSequence("A", []byte(B), "") sB := obiseq.NewBioSequence("A", []byte(B), "")
var x interface{}
x = sA
if _, ok := x.(*obiseq.BioSequence); ok {
fmt.Println("Purée")
}
if _, ok := x.(interface{ Length() int }); ok {
fmt.Println("Victoire")
}
fmt.Println(goutils.Len(x),goutils.Len([]int{1,2,3}))
// M := lcs.NewMyers([]byte(A), []byte(B)) // M := lcs.NewMyers([]byte(A), []byte(B))
// fmt.Println(M.LCS()) // fmt.Println(M.LCS())
// fmt.Println(M.SES()) // fmt.Println(M.SES())
@ -98,7 +114,7 @@ func main() {
// nlcs, nali := obialign.LCSScore(sA, sB, sB.Length(), nil) // nlcs, nali := obialign.LCSScore(sA, sB, sB.Length(), nil)
// fmt.Println(llcs, extra, len(A)+extra) // fmt.Println(llcs, extra, len(A)+extra)
// fmt.Println(nlcs, nali) // fmt.Println(nlcs, nali)
nlcs, nali := obialign.FastLCSScore(sA, sB, sB.Length(), nil) nlcs, nali := obialign.FastLCSScore(sA, sB, sB.Len(), nil)
fmt.Println(nlcs, nali) fmt.Println(nlcs, nali)
// option_parser := obioptions.GenerateOptionParser( // option_parser := obioptions.GenerateOptionParser(