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Reduce memory allocation events

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Former-commit-id: fbdb2afc857b02adc2593e2278d3bd838e99b0b2
This commit is contained in:
Eric Coissac
2024-06-22 21:01:53 +02:00
parent 54a138196c
commit e6b87ecd02
19 changed files with 166 additions and 75 deletions
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1
cmd/obitools/obicount/main.go
View File

@ -35,6 +35,7 @@ func main() {
_, args := optionParser(os.Args)
obioptions.SetStrictReadWorker(min(4, obioptions.CLIParallelWorkers()))
fs, err := obiconvert.CLIReadBioSequences(args...)
if err != nil {

3
cmd/obitools/obipairing/main.go
View File

@ -32,6 +32,9 @@ func main() {
optionParser := obioptions.GenerateOptionParser(obipairing.OptionSet)
optionParser(os.Args)
obioptions.SetStrictReadWorker(2)
obioptions.SetStrictWriteWorker(2)
pairs, err := obipairing.CLIPairedSequence()
if err != nil {

4
cmd/obitools/obitag/main.go
View File

@ -33,7 +33,9 @@ func main() {
// defer trace.Stop()
obioptions.SetWorkerPerCore(2)
obioptions.SetReadWorkerPerCore(0.5)
obioptions.SetStrictReadWorker(1)
obioptions.SetStrictWriteWorker(1)
obioptions.SetBatchSize(10)
optionParser := obioptions.GenerateOptionParser(obitag.OptionSet)